Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs78405305 chr5:169053813 G/A 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs7852546 chr9:23545955 C/T 2.73E-8 509 23.72 18.97 18.47 KM Plot
LGG rs7855342 chr9:13646219 C/G 1.23E-5 509 44.5 18.97 23.8 KM Plot
LGG rs78772538 chr11:69025058 C/G 5.88E-5 508 21.87 23.83 20.17 KM Plot
LGG rs78804079 chr5:168970932 C/T 1.42E-8 509 22.12 23.85 6.83 KM Plot
LGG rs788209 chr10:27434716 G/T 6.43E-5 509 16.73 20.62 24.05 KM Plot
LGG rs788221 chr10:27442247 G/C 6.58E-5 509 24.07 20.5 16.73 KM Plot
LGG rs78832756 chr2:74403263 C/T 2.6E-5 495 21.7 24.23 11.57 KM Plot
LGG rs78889501 chr6:53110486 C/T 1.69E-5 508 22.47 22.87 14.8 KM Plot
LGG rs78917925 chr5:169056876 T/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs78936977 chr6:53123958 C/T 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs7897917 chr10:86029864 T/C 1.23E-5 500 17.93 24.32 21.6 KM Plot
LGG rs79043940 chr5:168978055 C/G 1.51E-8 508 21.85 24.07 6.83 KM Plot
LGG rs7904511 chr10:107924820 G/A 5.01E-5 499 21.6 29.53 17.93 KM Plot
LGG rs79082885 chr5:157025726 A/C 3.49E-6 488 21.7 25.13 8.03 KM Plot